Journal articles
Braun, C. D., G. B. Skomal, and S. R. Thorrold. (in press). Basking shark (Cetorhinus maximus) movements in the northwest Atlantic Ocean using a high-resolution oceanographic model. Frontiers Mar. Sci.
Sequeira, A. M. M., et al. 2018. Convergence of marine megafauna movement patterns in coastal and open oceans. Proc. Natl. Acad. Sci. 115: 3072-3077
Braun, C. D., B. Galuardi, and S. R. Thorrold. 2018. An improved hidden Markov method for geolocation archival-tagged fishes. Methods Ecol. Evol. DOI: 10/1111/2041-210X.12959
Skomal, G. B., C. D. Braun, J. H. Chisholm, and S. R. Thorrold. 2017. Movements of the white shark (Carcharodon carcharias) in the North Atlantic Ocean. Mar. Ecol. Prog. Ser.580: 1-16.
Polito, M. J., J. T. Hinke, T. Hart, M. Santos, L. A. Houghton, and S. R. Thorrold. 2017. Stable isotope analyses of feather amino acids identify penguin migration strategies at ocean basin scales Biol. Lett. 13: 20170241.
Almany, G. R., S. Planes, S. R. Thorrold, M. L. Berumen, M. Bode, P. Saenz-Agudelo, M. C. Bonin, A. J. Frisch, H. B. Harrison, V. Messmer, G. B. Nanninga, M. A. Priest, M. Srinivasan, T. Sinclair-Taylor., D. H. Williamson, and G. P. Jones. 2017. Larval fish dispersal in a coral reef seascape. Nature Ecol. Evol. 1: 0148.
Pinsky, M. L., P. Saenz-Agudelo, O. C. Salles, G. R. Almany, M. Bode, M. L. Berumen, S. Andréfouët, S. R. Thorrold, G. P. Jones and S. Planes. 2017. Marine dispersal scales are congruent over evolutionary and ecological time. Curr. Biol 27: 149-154.
Humston, R., S. S. Doss, C. Hollenbeck, S. R. Thorrold, and S. Smith. 2017. Isotope geochemistry reveals ontogeny of dispersal and exchange between mainstem and tributary habitats in smallmouth bass Micropterus dolomieu. J. Fish Biol. 90: 528-548.
Salles, O. C., J. A. Maynard, G. R. Almany, M. L. Berumen, G. P. Jones, P. Saenz-Agudelo, S. R. Thorrold, and S. Planes. 2017. First genealogy for a wild marine fish population reveals multi-generational philopatry. Proc. Natl. Acad. Sci. 46: 13245-13250.
Salles, O. C, P. Saenz-Agudelo, G. R. Almany, M. L. Berumen, S. R. Thorrold, G. P. Jones, and S. Planes. 2016. Genetic tools link long-term demographic and life history traits of anemonefish to their anemone hosts. Coral Reefs 35: 1127-1138.
Herrera, M., G. B. Nanninga, S. Planes, G. P. Jones, S. R. Thorrold, P. Saenz-Agudelo, G. R. Almany, and M. L. Berumen. 2016. Seascape and life-history traits do not predict self-recruitment in a coral reef fish. Biol. Lett. 12: 20160309.
Cochran, J., R. Hardenstine, C. Braun, G. S. Skomal, S. R. Thorrold, K. Xu, and M. L. Berumen. 2016. Population structure of a whale shark Rhincodon typus aggregation in the Red Sea. J. Fish Biol. 89: 1570-1582.
Stanley, R. E., I. R. Bradbury, C. DiBacco, S. R. Thorrold, P. V. R. Snelgrove, C. J. Morris, R. S. Gregory, and S. E. Campana. 2016. Regional variation in otolith geochemistry of juvenile Atlantic cod, Gadus morhua, in coastal Newfoundland. Can. J. Fish. Aquat. Sci. 73: 1507-1519.
Rooker, J. R., R. J. D. Wells, D. G. Itano, S. R. Thorrold, and J. M. Lee. 2016. Natal origin and population connectivity of bigeye and yellowfin tuna in the Pacific Ocean. Fish. Oceanogr. 25: 277-291.
Roberts, M. B., G.P Jones, M. I. McCormick, P. L. Munday, S. Neale, S. Thorrold, V. S. N. Robitzch, and M. L. Berumen. 2016. Homogeneity of coral reef communities across 8 degrees of latitude in the Saudi Arabian Red Sea. Mar. Poll. Bull. doi:10.1016/j.marpolbul.2015.11.024
Salles, O. C., J. A. Maynard, G. R. Almany, M. L. Berumen, S. R. Thorrold, G. P. Jones, and S. Planes. 2015. Coral reef fish populations can persist without immigration. Proc. Royal Soc. B. 282: http://dx.doi.org/10.1098/rspb.2015.1311
McMahon, K. W., S. R. Thorrold, L. A. Houghton, and M. L. Berumen. 2016. Tracing carbon flow through coral reef food webs using a compound-specific stable isotope approach. Oecologia 180: 809-821.
Braun, C. D., G. S. Skomal, S. R. Thorrold, and M. L. Berumen. 2015. Quantifying movements of the reef manta ray (Manta alfredi) in the southeast Red Sea using satellite and acoustic telemetry. Mar. Biol. 162: 2351-2362.
Hinke, J. T., M. J. Polito, M. E. Goebel, S. Jarvis, C. S. Reiss, S. R. Thorrold, W. Z. Trivelpiece, and G. M. Watters. 2015. Spatial and isotopic niche partitioning during winter in chinstrap and Adélie penguins from the South Shetland Islands. Ecosphere 6: doi: 10.1890/ES14-00287.1
Stanley, R. R. E, I. R. Bradbury, C. DiBacco, P. V. R. Snelgrove, S. R. Thorrold, and S. Killen. 2015. Environmentally mediated trends in otolith composition of juvenile Atlantic cod (Gadus morhua). ICES J. Mar. Sci 72: 2350-2363.
Bouchard, C., S. R. Thorrold, and L. Fortier. 2015. Spatial segregation, dispersion and migration in early stages of polar cod Boreogadus saida revealed by otolith chemistry. Mar. Biol. 162: 855-868.
McMahon, K. W., S. R. Thorrold, T. S. Elsdon, and M. D. McCarthy. 2015. Quantifying nitrogen isotope fractionation of amino acids in fish muscle: an experimental approach. Limnol. Oceanogr. 60: 1076-1087 doi: 10.1002/lno.10081.
McMahon, K. W., M. J. Polito, S. Abel, M. D. McCarthy, S. R. Thorrold. 2015. Carbon and nitrogen isotopic fractionation of amino acids in an avian marine predator, the Gentoo penguin (Pygoscelis papua). Ecol. Evol. 5: 1278-1290 doi: 10.1002/ece3.1437.
Saenz-Agudelo, P., G. P. Jones, S. R. Thorrold, and S. Planes. 2015. Mothers matter: Contribution to local replenishment increases with female size in a fish metapopulation. Mar. Biol. 162: 3-14.
Rotjan, R., R. Jamieson, B. Carr, L. Kaufman, S. Mangubhai, D. Obura, R. Pierce, B. Rimon, B. Ris, S. Sandin, P. Shelley, U. R. Sumaila, S. Taei, H. Tausig, T. Teroroko, S. Thorrold, T. Toatu, and G. Stone. 2014. Establishment, Management, and Maintenance of the Phoenix Islands Protected Area. Adv. Mar. Biol. 69: 287-322.
Berumen, M. L., C. D. Braun, J. E. M. Cochran, G. B. Skomal, and S. R. Thorrold. 2014. Movement patterns of juvenile whale sharks tagged at an aggregation site in the Red Sea. PLoS ONE 9: e103536. doi: 10.1371/journal.pone.0103536.
Thorrold, S. R., P. Afonso, J. M. R. Fontes, C. D. Braun, G. B. Skomal, and M. L. Berumen. 2014. Extreme diving behavior in devil rays link surface waters and the deep ocean. Nature Comm. 5: doi: 10.1038/10.1038/ncomms5274.
Tanner, S. E., M. Pérez, P. Presa, S. R. Thorrold, and H. N. Cabral. 2014. Integrating microsatellite DNA markers and otolith geochemistry to assess population structure of European hake (Merluccius merluccius). Est. Coastal Shelf Sci. 142: 68-75.
Braun, C. D., G. B. Skomal, S. R. Thorrold, and M. L. Berumen. 2014. Diving behavior of the reef manta ray links coral reefs with adjacent deep pelagic habitats. PLoS ONE 9: e88170. doi: 10.1371/journal.pone.0088170.
Hamady, L. L., L. J. Natanson, G. B. Skomal, and S. R. Thorrold. 2014. Vertebral bomb radiocarbon suggests exceptional longevity in white sharks. PLoS ONE 9: e84006. doi:10.1371/journal.pone.0084006.
Dixson, D. L., G. P. Jones, P. L. Munday, S. Planes, M. S. Pratchett and S. R. Thorrold. 2014. Experimental evaluation of imprinting as a mechanism for habitat selection in a coral reef fish. Oecologia DOI 10.1007/s00442-013-2755-z.
Almany, G. R., R. Hamilton, M. Matawai, M. Bode, T. Potuku, P. Saenz-Agudelo, S. Planes, M. Berumen, K. Rhodes, S. R. Thorrold, G. Russ and G. P. Jones. 2013. Dispersal of grouper larvae drives resource sharing in a coral reef fishery. Curr. Biol. 23: 626-630.
McMahon, K. W., L. L. Hamady, and S. R. Thorrold. 2013. A review of ecogeochemistry approaches to estimating movements of marine animals. Limnol. Oceanogr. 58: 593-612.
McMahon, K. W., L. L. Hamady, and S. R. Thorrold. 2013. Ocean ecogeochemistry: A review. Oceanogr. Mar. Biol. Ann. Rev. 51: 325-372.
Tanner, S. E., P Reis-Santos, R. P. Vasconcelos, V. Fonseca, S. Franca, H. N. Cabral, and S. R. Thorrold. 2013. Does otolith geochemistry record ambient environmental conditions in estuaries? J. Exp. Mar. Biol. Ecol. 441: 7-15.
Tanner, S. E., P. Reis-Santos, R. P. Vasconcelos, S. R. Thorrold, and H. N. Cabral. 2013. Population connectivity of Solea solea and Solea senegalensis over time. J. Sea Res. 76: 82-88.
Roy, A. S., A. J. Frisch, C. Syms, S. R. Thorrold, and G. P. Jones. 2013. Retention of a transgenerational marker (137Barium) in tissues of adult female anemonefish and assessment of physiological stress. Environ. Biol. Fishes 96: 459-466.
McMahon, K. W., M. L. Berumen, and S. R. Thorrold. 2012. Linking habitat mosaics and juvenile fish migration in a coral reef seascape. Proc. Natl. Acad. Sci. 109: 15372-15376.
Saenz-Agudelo, P., G. P. Jones, S. R. Thorrold and S. Planes. 2012. Patterns and persistence of larval retention and connectivity in a marine fish metapopulation. Mol. Ecol. 21: 4695-4705 doi: 10.1111/j.1365-294X.2012.05726.x.
Upton, S. A., B. D. Walther, S. R. Thorrold, and J. E. Olney. 2012. Use of a natural isotopic signature in otoliths to evaluate scale-based age determination for American shad. Mar. Coast. Fish. Dynam. Manag. Ecosys. Sci. 4: 346-357.
Harrison, H. B., D. H. Williamson, R. D. Evans, G. R. Almany, S. R. Thorrold, G. R. Russ, K. A. Feldheim, L. van Herwerden, S. Planes, M. Srinivasan, M. L. Berumen, and G. P. Jones. 2012. Larval export from marine reserves benefits fish and fisheries. Curr. Biol. 22: 1023-1028. DOI 10.1016/j.cub.2012.04.008.
Muhlfeld, C. C., S. R. Thorrold, T. E. McMahon, and B. Marotz. 2012. Estimating trout movements in a river network using strontium isoscapes. Can. J. Fish. Aquat. Sci. 69: 906-915.
Spaet, J. L. Y., S. R. Thorrold and M. L. Berumen, 2012. A review of elasmobranch research in the Red Sea. J. Fish Biol. DOI: 10.1111/j.1095-8649.2011.03178.x
Tanner, S. E., R. P. Vasconcelos, H. N. Cabral, and S. R. Thorrold. 2012. Testing an otolith geochemistry approach to determine population structure and movements of European hake in the northeast Atlantic Ocean and Mediterranean Sea. Fish. Res. 125-126: 198-205.
Tanner, S. E., P. Reis-Santos, R. P. Vasconcelos, S. Franca, S. R. Thorrold, and H. N. Cabral. 2012. Otolith geochemistry discriminates estuarine nursery areas of Solea solea and Solea senegalensis through time. Mar. Ecol. Prog. Ser. 452: 193-203.
Berumen, M. L., G. Almany, S. Planes, G. P. Jones, and S. R. Thorrold. 2012. Persistence of self-recruitment and patterns of larval connectivity in a marine protected area network. Ecol. Evol. 2: 444-452. DOI: 10.1002/ece3.208.
Krause-Nehring, J., T. Brey, and S. R. Thorrold. 2012. Centennial records of lead contamination in northern Atlantic bivalves (Arctica islandica). Mar. Pollution Bull.64: 233-240.
Buston, P. M., G. P. Jones, S. Planes, and S. R. Thorrold. 2012. Probability of successful larval dispersal declines fivefold over 1 km in a coral reef fish. Proc. R. Soc. B. 279: 1883-1888.
Dixson, D. L., G. P. Jones, P. L. Munday, M. S. Pratchett, M. Srinivasan, S. Planes and S. R. Thorrold. 2011. Terrestrial chemical cues help coral reef fish larvae locate settlement habitat surrounding islands. Ecol. Evol.1: 586-595doi: 10.1002/ece3.53
Saenz-Agudelo, P., G. P. Jones, S. R. Thorrold, and S. Planes. 2011. Connectivity dominates larval replenishment in a coastal reef fish metapopulation. Proc. R. Soc. B 278: 2954-2961.
McMahon, K. W., M. L. Berumen, I. Mateo, T. S. Elsdon, and S. R. Thorrold. 2011. Stable isotope signatures in otolith amino acids of juvenile snapper (Family: Lutjanidae) record habitat-specific isoscapes from coastal nurseries. Coral Reefs 30: 1135-1145 doi: 10.1007/s00338-011-0816-5.
Bradbury, I. R., C. DiBacco, S. R. Thorrold, P. V. R. Snelgrove, and S. E. Campana. 2011. Resolving natal tags using otolith geochemistry in rainbow smelt, Osmerus mordax, from coastal Newfoundland. Mar. Ecol. Prog. Ser. 433: 195-204.
McMahon, K. W., M. L. Fogel, B. J. Johnson, L. A. Houghton, and S. R. Thorrold. 2011. Reconstructing fish diet and movement patterns using stable carbon isotope analysis of otolith amino acids. Can. J. Fish. Aquat. Sci. 68: 1330-1340.
Munday, P. L., V. Hernaman, D. L. Dixson, and S. R. Thorrold. 2011. Effect of ocean acidification on otolith development in larvae of a tropical marine fish. Biogeosciences 8: 1631-1641. doi:10.5194/bg-8-1631-2011.
Saenz-Agudelo, P., G. P. Jones, S. R. Thorrold, and S. Planes. 2011. Detrimental effects of host anemone bleaching on anemonefish populations. Coral Reefs 30: 497-506.
Munday, P. L., M. Gagliano, J. M. Donelson, D. L. Dixson, and S. R. Thorrold. 2011. Ocean acidification does not affect the early life history development of a tropical marine fish. Mar. Ecol. Prog. Ser. 423: 211-221.
Tanner, S. E., R. P. Vasconcelos, P. Reis-Santos, H. N. Cabral, and S. R. Thorrold. 2011. Spatial and ontogenetic variability in the chemical composition of juvenile common sole (Solea solea) otoliths. Est. Coast. Shelf Sci. 91: 150-157.
Clarke, L. M.,S. R. Thorrold, and D. O. Conover. 2011. Population differences in otolith chemistry have a genetic basis in Menidia menidia. Can. J. Fish. Aquat. Sci. 68: 105-114.
Clarke, L. M., S. B. Munch, S. R. Thorrold, and D. O. Conover. 2010. Dispersal of Menidia menidia: Evidence for high connectivity in a locally adapted species. Ecology 91: 3526-3537.
Berumen, M. L., H. J. Walsh, N. Raventos, S. Planes, G. P. Jones, V. Starczak, and S. R. Thorrold. 2010. Otolith geochemistry does not reflect dispersal history of clownfish larvae. Coral Reefs 29: 883-891.
Walther, B. D. and S. R. Thorrold. 2010. Limited diversity in natal origins of an anadromous fish during ocean residency. Can. J. Fish. Aquat. Sci. 67: 1699-1707.
McMahon, K. W., M. L. Fogel, T. S. Elsdon, and S. R. Thorrold. 2010. Carbon isotope fractionation of amino acids in fish muscle reflects diet and potential migration pathways. J. Animal Ecol. 79: 1132-1141.
Elsdon T. S., S. Ayvazian, K. W. McMahon, and S. R. Thorrold. 2010. Experimental evaluation of stable isotope fractionation in fish muscle and otoliths. Mar. Ecol. Prog. Ser. 408: 181-193.
Almany, G. R. et al. 2009. Permanent genetic resources added to Molecular Ecology Resources database 1 May 2009–31 July 2009. Mol. Ecol. Resources 9: 1460-1466.
Williamson, D. H., G. P. Jones and S.R. Thorrold. 2009. An experimental evaluation of transgenerational isotope labelling in a coral reef grouper. Mar. Biol. 156: 2517-2525.
Walther, B. D., and S. R. Thorrold. 2009. Inter-annual variability in isotope and elemental ratios recorded in otoliths of an anadromous fish. J. Geochem. Explor. 102: 181-186.
Clarke, L. M., B. D. Walther, S. B. Munch, S. R. Thorrold, and D. O. Conover. 2009. Chemical signatures in the otoliths of a coastal marine fish, Menidia menidia, from the northeastern United States: spatial and temporal differences. Mar. Ecol. Prog. Ser. 384: 261-271.
Skomal, G. B., S. Zeeman, J. Chisholm, E. Summers, H. J. Walsh, K. W. McMahon, and S. R. Thorrold. 2009. Transequatorial migrations by basking sharks in the western Atlantic Ocean. Curr. Biol. 19: 1019-1022.
Botsford, L. W., J. W. White, M.A. Coffroth, C. B. Paris, S. Planes, T. L. Shearer, S. R. Thorrold and G.P. Jones. 2009. Connectivity and resilience of coral reef metapopulations in MPAs: matching empirical efforts to predictive needs. Coral Reefs 28: 327-337.
McCook, L. J., G. R. Almany, M. L. Berumen, J. C. Day, A. L. Green, G. P. Jones, J. M. Leis, S. Planes, G. R. Russ, P. F. Sale, and S. R. Thorrold. 2009. The challenge of incorporating connectivity science into coral reef management now: principles and practice. Coral Reefs 28: 353-366.
Planes, S., G. P. Jones and S. R. Thorrold. 2009. Larval dispersal connects fish populations in a network of marine protected areas. Proc Natl. Acad. Sci. 106: 5693-5697.
Saenz-Agudelo, P., G. P. Jones, S. R. Thorrold, and S. Planes. 2009. Estimating connectivity in marine populations: an empirical evaluation of assignment tests and parentage analysis at different spatial scales. Molecular Ecol. 18: 1765-1776.
Williamson, D. H., G. P. Jones, S. R. Thorrold and A. J. Frisch. 2009. Transgenerational marking of marine fish larvae: stable isotope retention, physiological effects and health issues. J. Fish Biol. 74: 891-905.
White, J. W., J. D. Standish, S. R. Thorrold, and R. R. Warner. 2008. Markov Chain Monte Carlo methods for assigning larvae to natal sites using natural geochemical tags. Ecol. Appl. 18: 1901-1913.
Walther, B. D., and S. R. Thorrold. 2008. Continental-scale variation in otolith geochemistry of juvenile American shad. Can. J. Fish. Aquat. Sci. 65: 2623-2635.
Rosenheim, B. E., S. R. Thorrold and M. L. Roberts. 2008. Accelerator mass spectrometer 14C determination in CO2 produced from laser decomposition of aragonite. Rapid Comm. Mass Spectrom. 22: 3443-3449.
Shcherbina, A. Y., G. G. Gawarkiewicz, C. A. Linder, and S. R. Thorrold. 2008. Mapping bathymetric and hydrographic features of Glover’s Reef, Belize, with a REMUS autonomous underwater vehicle. Limnol. Oceanogr. 53: 2264-2272.
Dixon, D. L., G. P. Jones, P. L. Munday, S. Planes, M. S. Pratchett, M. Srinivasan, C. Syms and S. R. Thorrold. 2008. Coral reef fish smell leaves to find island homes. Proc. R. Soc. B. 275: 2831-2839, doi:10.1098/rspb.2008.0876.
Walther, B. D., S. R. Thorrold and J. E. Olney. 2008. Geochemical signatures in otoliths record natal origins of American shad. Trans Am. Fish. Soc. 137: 57-69.
Elsdon. T. S., B. K. Wells, S. E. Campana, B. M. Gillanders, C. M. Jones, K. E. Limburg, D. H. Secor, S. R. Thorrold, and B. D. Walther. 2008. Otolith chemistry to describe movements and life-history parameters of fishes: Hypotheses, assumptions, limitations, and inferences. Oceanogr. Mar. Biol. Ann. Rev. 46: 297-330.
Strasser, C. A., S. R. Thorrold, V. R. Starczak, and L. S. Mullineaux. 2007. Laser ablation ICP-MS analysis of larval shell in softshell clams (Mya arenaria) poses challenges for natural tag studies. Limnol. Oceanogr. Methods 5: 241-249.
Thorrold, S. R., D. C. Zacherl and L. A. Levin. 2007. Population connectivity and larval dispersal using geochemical signatures in calcified structures. Oceanogr. 20: 32-41.
Cowen, R. K., G. Gawarkiewicz, J. Pineda, S. R. Thorrold and F. E. Werner. 2007. Population connectivity in marine systems: an overview. Oceanogr. 20: 16-23.
Cohen, A. E., and S. R. Thorrold. 2007. Recovery of temperature records from slow-growing corals by fine scale sampling of skeletons. Geophys. Res. Lett. 34: L17706 doi:10.1029/2007GL030967.
Hare, J. A., and H. J. Walsh. 2007. Planktonic linkages among marine protected areas on the south Florida and southeast United States continental shelves. Can. J. Fish. Aquat. Sci. 64: 1234-1247.
Almany, G. R., M. L. Berumen, S. R. Thorrold, S. Planes, and G. P. Jones. 2007. Local replenishment of coral reef fish populations in a marine reserve. Science 316: 742-744.
Thorrold, S. R. 2006. Ocean ecology: don’t fence me in. Curr. Biol. 16: R638-R640.
Ambrose, W. G. Jr., M. L. Carroll, M. Greenacre, S. R. Thorrold, and K. McMahon. 2006. Variation in Serripes groenlandicus (Bivalvia) growth in a Norwegian high-Artic fjord: Evidence for local and large-scale climatic forcing. Global Change Biol. 12: 1595-1607.
Thorrold, S. R., G. P Jones, S. Planes, and J. A. Hare. 2006. Transgenerational marking of embryonic otoliths in marine fishes using barium stable isotopes. Can. J. Fish. Aquat. Sci. 63: 1193-1197. (http://hdl.handle.net/1912/1407)
Walther, B. D., and S. R. Thorrold. 2006. Water, not food, contributes the majority of strontium and barium deposited in the otoliths of a marine fish. Mar. Ecol. Prog. Ser. 311: 125-130.
Hare, J. A., S. R. Thorrold, H. Walsh, C. Reiss, A. Valle-Levinson, and C. M. Jones. 2005. Biophysical mechanisms of larval fish ingress into Chesapeake Bay. Mar. Ecol. Prog. Ser. 303: 295-310.
Rosenheim, B. E., P. K. Swart, and S. R. Thorrold. 2005. Minor and trace elements in sclerosponge Ceratopella nicholsoni:biogenic aragonite near the inorganic endmember. Paleogeogr. Paleoclimatol. Paleoecol. 228: 109-129.
Sturgeon, R. E., S. N. Willie, L. Yang, R. Greenberg, R. O. Spatz, Z. Chen, C. Scriver, V. Clancy, J. W. Lam and S. Thorrold. 2005. Certification of a fish otolith reference material in support of quality assurance for trace element analysis. J. Anal. Atom. Spectrom. 20: 1067-1071, DOI: 10.1039/b503655k.
Jones, G. P., S. Planes, and S. R. Thorrold. 2005.Coral reef fish larvae settle close to home. Curr. Biol.15: 1314-1318, DOI: 10.1016/j.cub.2005.06.061.
Muhlfeld, C. C., B. Marotz, S. R. Thorrold, and J. L. FitzGerald. 2005. Geochemical signatures in scales records stream of origin in westslope cutthroat trout.Trans. Am. Fish. Soc.134:945-959.
Martin, G. B., and S. R. Thorrold. 2005.Temperature and salinity effects on magnesium, manganese and barium in the otoliths of larval spot (Leiostomus xanthurus). Mar. Ecol. Prog. Ser. 293: 223-232.
Rosenheim, B. E., P. K. Swart, S. R. Thorrold, A. Eisenhauer, and P. Willenz. 2005. Salinity change in the subtropical Atlantic: Secular increase and teleconnections to the North Atlantic Oscillation. Geophys. Res. Lett. 32: L02603, doi:10.1029/2004GL021499.
Estrada, J. A., M. Lutcavage, and S. R. Thorrold. 2005.Diet and trophic position of Atlantic bluefin tuna (Thunnus thynnus) inferred from stable carbon and nitrogen isotope analysis. Mar. Biol. 147: 37-45.
FitzGerald, J. L., S. R. Thorrold, K. M. Bailey, A. Brown, and K. P. Severin. 2004.Elemental signatures in otoliths of larval walleye pollock (Theragra calcogramma) from the northeast Pacific Ocean.Fish. Bull. U.S.102:604-616. (http://hdl.handle.net/1912/131)
Arkhipkin, A., S. E. Campana, J. FitzGerald, and S. R. Thorrold. 2004. Spatial and temporal variation in elemental signatures of statoliths from the Patagonian longfin squid (Loligo gahi). Can. J. Fish. Aquat. Sci. 61: 1212-1224. (http://hdl.handle.net/1912/226 )
Rosenheim, B. E., P. K. Swart, S. R. Thorrold, P. Willenz, L. Berry, and C. Latkoczy. 2004. High resolution Sr/Ca records in sclerosponges calibrated to temperature in situ. Geology 32: 145-148.
Martin, G. B.,S. R. Thorrold, and C. M. Jones. 2004. The influence of temperature and salinity on strontium uptake in the otoliths of juvenile spot (Leiostomus xanthurus). Can. J. Fish. Aquat. Sci. 61:34-42. (http://hdl.handle.net/1912/234)
Wells, B. K., S. R. Thorrold, and C. M. Jones.2003. Stability of elemental signatures in the scales of spawning weakfish (Cynoscion regalis). Can. J. Fish. Aquat. Sci 60: 361-369.
Swart, P. K., S. Thorrold, J. Rubenstone, B. Rosenheim, C. G. A Harrison, M. Grammer, and C. Latkoczy. 2002.Intra-annual variation in the stable oxygen and carbon and trace element composition of sclerosponges. Paleoceanography 17: 1045, doi: 10.1029/2000PA000622.
Swearer, S. E., J. S. Shima, M. E. Hellberg, S. R. Thorrold, G. P. Jones, D. R. Robertson, S. G. Morgan, K. A Selkoe, G. M. Ruiz, and R. R. Warner. 2002. Evidence of self-recruitment in demersal marine populations. Bull. Mar. Sci. 70(1) Suppl.: 251-271.
Thorrold, S. R., G. P. Jones, M. E. Hellberg, R. S. Burton, S. E. Swearer, J. E. Niegel, S. G. Morgan, and R. R. Warner. 2002. Quantifying larval retention and connectivity in marine populations with artificial and natural markers. Bull. Mar. Sci. 70(1) Suppl.: 291-308.
Campana, S. E., and S. R. Thorrold. 2001. Otoliths, increments, and elements: keys to a comprehensive understanding of fish populations? Can. J. Fish. Aquat. Sci. 58:30-38.
Thorrold, S. R., C. Latkoczy, P. K. Swart, and C. M. Jones. 2001. Natal homing in a marine fish metapopulation. Science 291: 297-299.
Wells, B. K., G. E. Bath, S. R. Thorrold, and C. M. Jones. 2000. Incorporation of strontium, cadmium and barium in juvenile spot (Leiostomus xanthurus) scales reflects water chemistry.Can. J. Fish. Aquat. Sci. 57: 2122-2129.
Wells, B. K., S. R. Thorrold, and C. M. Jones.2000. Geographic variation in trace element composition of juvenile weakfish (Cynoscion regalis) scales. Trans. Am. Fish. Soc. 129:889-900.
Thorrold, S. R., and S. Shuttleworth.2000. In situ analysis of trace elements and isotope ratios in fish otoliths using laser ablation sector field ICP-MS. Can. J. Fish. Aquat. Sci. 57:1232-1242.
Bath, G. E., S. R. Thorrold, C. M. Jones, S. E. Campana, J. W. McLaren and J. W. H. Lam. 2000. Strontium and barium uptake in aragonitic otoliths of marine fish.Geochim. Cosmochim. Acta 64: 1705-1714.
Patterson, H., S. R. Thorrold, and J. M. Shenker. 1999. Analysis of otolithmicrochemistry in Nassau grouper (Epinephelus striatus) from theBahamas and Belize using solution-based ICPMS. Coral Reefs 18: 171-178.
Thorrold, S. R., C. M. Jones, P. K. Swart and T. E. Targett. 1998. Accurate classification of nursery areas of juvenile weakfish (Cynoscion regalis) based on chemical signatures in otoliths.Mar. Ecol. Prog. Ser. 173:253-265.
Thorrold, S. R., S. E. Campana, C. M. Jones, J. W. McLaren and J. W. H. Lam. 1998. Trace element signatures in otoliths accurately record natal river of juvenile American shad (Alosa sapidissima). Limnol. Oceanogr. 43: 1826-1835.
Thorrold, S. R., S. E. Campana, C. M. Jones and P. K. Swart. 1997. Factors determining d13C and d18O fractionation in aragonitic otoliths of marine fish. Geochim. Cosmochim. Acta 61:2909-2919.
Campana, S. E., S. R. Thorrold, and 17 others. 1997. Comparison of accuracy, precision, and sensitivity in elemental assays of fish otoliths using the electron microprobe, proton-induced X-ray emission, and laser ablation inductively coupled plasma mass spectrometry. Can. J. Fish. Aquat. Sci. 54:2068-2079.
Thorrold, S. R., C. M. Jones and S. E. Campana.1997. Response of otolith microchemistry to environmental variations experienced by larval and juvenile Atlantic croaker (Micropogonias undulatus). Limnol. Oceanogr. 42: 102-111.
Thorrold, S. R., and D. McB. Williams. 1996.Mesoscale distribution patterns of larval and juvenile fishes in the central Great Barrier Reef lagoon. Mar. Ecol. Prog. Ser. 145: 17-31.
Fowler, A. J., S. E. Campana, C. M. Jones and S. R. Thorrold. 1995.Experimental assessment of the effect of temperature and salinity on elemental composition of otoliths using solution-based ICPMS. Can. J. Fish. Aquat. Sci. 52: 1421-1430.
Fowler, A. J., S. E. Campana, C. M. Jones and S. R. Thorrold. 1995.Experimental assessment of the effect of temperature and salinity on elemental composition of otoliths using laser ablation ICPMS. Can. J. Fish. Aquat. Sci. 52:1431-1441.
Thorrold, S. R., and A. D. McKinnon. 1995.Response of ichthyoplankton assemblages to a riverine plume in the central Great Barrier Reef lagoon. Limnol. Oceanogr. 40: 177-181.
Thorrold, S. R., J. M. Shenker, E. D. Maddox, R. Mojica and E. Wishinski. 1994. Larval supply of shorefishes to nursery habitats around Lee Stocking Island, Bahamas I. Small scale distribution patterns. Mar. Biol. 118: 555-566.
Thorrold, S. R., J. M. Shenker, E. Wishinski, R. Mojica and E. D. Maddox. 1994. Larval supply of shorefishes to nursery habitats around Lee Stocking Island, Bahamas II. Lunar and oceanographic influences. Mar. Biol. 118: 567-578.
Thorrold, S. R., J. M. Shenker, R. Mojica Jr, E. D. Maddox and E. Wishinski. 1994. Temporal patterns in the larval supply of summer-recruiting reef fishes to Lee Stocking Island, Bahamas. Mar. Ecol. Prog. Ser. 112: 75-86.
Thorrold, S. R. 1993.Post-larval and juvenile scombrids captured in light traps: Preliminary results from the central Great Barrier Reef lagoon. Bull. Mar. Sci. 52: 631-641.
Shenker, J. M., E. D. Maddox, E. Wishinski, S. Pearl, S. R. Thorrold, and N. Smith.1993. Onshore transport of settlement-stage Nassau grouper Epinephelus striatus and other fishes in Exuma Sound, Bahamas. Mar. Ecol. Prog. Ser. 98: 31-43.
McKinnon, A. D., and S. R. Thorrold. 1993. Zooplankton community structure and copepod egg production in coastal waters of the central Great Barrier Reef lagoon. J. Plankton Res. 15: 1387-1411.
Thorrold, S. R.1992. Evaluating the performance of light traps for sampling small fish and squid in open waters of the central Great Barrier Reef lagoon. Mar. Ecol. Prog. Ser. 89: 277-285.
Thorrold, S. R.1992. Coupling of hydrography and pre-settlement reef fish distributions in the central Great Barrier Reef lagoon. Proc. 7th Int. Coral Reef Symp. 1: 629-635.
Thorrold, S. R., and M. J. Milicich. 1990. Comparison of larval duration and pre- and post-settlement growth in two species of damselfish, Chromis atripectoralis and Pomacentrus coelestis (Pisces: Pomacentridae) from the Great Barrier Reef. Mar. Biol. 105: 375-384.
Thorrold, S. R. 1989. Estimating some early life history parameters in a tropical herring, Herklotsichthys castelnaui, from daily growth increments in otoliths. Fish. Bull. U.S. 87: 73-83.
Thorrold, S. R., and D. McB. Williams. 1989. Analysis of otolith microstructure to determine growth histories in larval cohorts of a tropical herring (Herklotsichthys castelnaui). Can. J. Fish. Aquat. Sci. 46: 1615-1624.
Book chapters
Thorrold, S. R., and S. E. Swearer. 2009. Otolith chemistry, pp. 249-295. In: Green, B., G. Begg, B. D. Mapstone, G. Carlos and G. A. Begg [eds] Tropical fish otoliths: Information for assessment, management and ecology. Springer.
Thorrold, S. R., and J. A. Hare. 2002. Otolith applications in reef fish ecology, pp. 243-264. In: Sale, P. F. [ed] Advances in the Ecology of Fishes on Coral Reefs. Academic Press.
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